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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca21217.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | LBD | ||||||||
Protein Properties | Length: 324aa MW: 36533.7 Da PI: 5.9762 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.4 | 6.5e-40 | 33 | 132 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++rrkCa+dCvlapyfp++++++f n+hklFG+sn++k++k+l+++++++am+++++++++rardPv G++++i++l++q+e kael+l+ + Dca21217.1 33 ACAACKYQRRKCAPDCVLAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLNPQDKDIAMHTIMFQSDVRARDPVGGCYSIIRDLHHQIEFCKAELDLVFQ 131 7*********************************************************************************************99877 PP DUF260 100 e 100 + Dca21217.1 132 Q 132 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.057 | 32 | 133 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.1E-37 | 33 | 128 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MNNNIINNTL PKTNILNTIS STNHHRISIG TQACAACKYQ RRKCAPDCVL APYFPHDRQR 60 QFLNAHKLFG VSNITKIIKN LNPQDKDIAM HTIMFQSDVR ARDPVGGCYS IIRDLHHQIE 120 FCKAELDLVF QQLAICKAQA FQQHSQLMSI NHQHVVVPPL PHPTFQGVVE EDNNGDNNHN 180 NINNNINGNN EEDNEENYRH YHEMLMRCQY DDGDQGGVQY VGEHESDQFS WTPHDDVVLA 240 SSNSSNSHGD CFIVKQDLGS ECDGFPMKLM RLDSSEPPPY GVSDHVDITC GVTIQSDGIK 300 FGSHPTTQLS EEIVLKENKI MVGN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010686136.1 | 1e-63 | PREDICTED: LOB domain-containing protein 22 | ||||
TrEMBL | A0A0J8BY58 | 2e-85 | A0A0J8BY58_BETVU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400012498 | 1e-59 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 9e-59 | LOB domain-containing protein 22 |